LungCancerLines

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see LungCancerLines.

Reads from Two Lung Cancer Cell Lines


Bioconductor version: 3.12

Reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.

Author: Cory Barr, Michael Lawrence

Maintainer: Cory Barr <barr.cory at gene.com>

Citation (from within R, enter citation("LungCancerLines")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LungCancerLines")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews CancerData, ExperimentData, Genome, LungCancerData, RNASeqData
Version 0.28.0
License Artistic-2.0
Depends
Imports Rsamtools
System Requirements
URL
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Depends On Me
Imports Me
Suggests Me gmapR, HTSeqGenie, VariantTools
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LungCancerLines_0.28.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/LungCancerLines
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LungCancerLines
Package Short Url https://bioconductor.org/packages/LungCancerLines/
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