vasp

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see vasp.

Quantification and Visualization of Variations of Splicing in Population


Bioconductor version: 3.12

Discovery of genome-wide variable alternative splicing events from short-read RNA-seq data and visualizations of gene splicing information for publication-quality multi-panel figures.

Author: Huihui Yu, Qian Du, Chi Zhang

Maintainer: Huihui Yu <yuhuihui2011 at foxmail.com>

Citation (from within R, enter citation("vasp")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("vasp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vasp")
Variations of Splicing in Population HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews AlternativeSplicing, Clustering, DifferentialExpression, DifferentialSplicing, ImmunoOncology, KEGG, Preprocessing, RNASeq, Software, StatisticalMethod, Visualization
Version 1.2.4
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License GPL (>= 2.0)
Depends R (>= 4.0), ballgown
Imports IRanges, GenomicRanges, S4Vectors, Sushi, parallel, matrixStats, GenomicAlignments, GenomeInfoDb, Rsamtools, cluster, stats, graphics, methods
System Requirements
URL https://github.com/yuhuihui2011/vasp
Bug Reports https://github.com/yuhuihui2011/vasp/issues
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Suggests knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package vasp_1.2.4.tar.gz
Windows Binary vasp_1.2.4.zip
macOS 10.13 (High Sierra) vasp_1.2.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/vasp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/vasp
Bioc Package Browser https://code.bioconductor.org/browse/vasp/
Package Short Url https://bioconductor.org/packages/vasp/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive