ldblock

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see ldblock.

data structures for linkage disequilibrium measures in populations


Bioconductor version: 3.12

Define data structures for linkage disequilibrium measures in populations.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ldblock")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ldblock")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ldblock")
ldblock package: linkage disequilibrium data structures HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Software
Version 1.20.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License Artistic-2.0
Depends R (>= 3.5), methods
Imports Matrix, snpStats, VariantAnnotation, GenomeInfoDb, httr, ensembldb, EnsDb.Hsapiens.v75, Rsamtools, GenomicFiles(>= 1.13.6), BiocGenerics(>= 0.25.1)
System Requirements
URL
See More
Suggests RUnit, knitr, BiocStyle, gwascat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me gQTLstats
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ldblock_1.20.0.tar.gz
Windows Binary ldblock_1.20.0.zip
macOS 10.13 (High Sierra) ldblock_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ldblock
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ldblock
Bioc Package Browser https://code.bioconductor.org/browse/ldblock/
Package Short Url https://bioconductor.org/packages/ldblock/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive