OmicsMarkeR
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see OmicsMarkeR.
Classification and Feature Selection for 'Omics' Datasets
Bioconductor version: 3.12
Tools for classification and feature selection for 'omics' level datasets. It is a tool to provide multiple multivariate classification and feature selection techniques complete with multiple stability metrics and aggregation techniques. It is primarily designed for analysis of metabolomics datasets but potentially extendable to proteomics and transcriptomics applications.
Author: Charles E. Determan Jr. <cdetermanjr at gmail.com>
Maintainer: Charles E. Determan Jr. <cdetermanjr at gmail.com>
citation("OmicsMarkeR")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("OmicsMarkeR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Classification, FeatureExtraction, Metabolomics, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | GPL-3 |
| Depends | R (>= 3.2.0) |
| Imports | graphics, stats, utils, plyr (>= 1.8), data.table (>= 1.9.4), caret (>= 6.0-37), DiscriMiner (>= 0.1-29), e1071 (>= 1.6-1), randomForest (>= 4.6-10), gbm (>= 2.1), pamr (>= 1.54.1), glmnet (>= 1.9-5), caTools (>= 1.14), foreach (>= 1.4.1), permute (>= 0.7-0), assertive (>= 0.3-0), assertive.base (>= 0.0-1) |
| System Requirements | |
| URL | http://github.com/cdeterman/OmicsMarkeR |
| Bug Reports | http://github.com/cdeterman/OmicsMarkeR/issues/new |
See More
| Suggests | testthat, BiocStyle, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/OmicsMarkeR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OmicsMarkeR |
| Package Short Url | https://bioconductor.org/packages/OmicsMarkeR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |