MIMOSA

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MIMOSA.

Mixture Models for Single-Cell Assays


Bioconductor version: 3.12

Modeling count data using Dirichlet-multinomial and beta-binomial mixtures with applications to single-cell assays.

Author: Greg Finak <gfinak at fhcrc.org>

Maintainer: Greg Finak <gfinak at fhcrc.org>

Citation (from within R, enter citation("MIMOSA")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MIMOSA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MIMOSA")
MIMOSA: Mixture Models For Single Cell Assays PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews CellBasedAssays, FlowCytometry, ImmunoOncology, Software
Version 1.28.1
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License MIT + file LICENSE
Depends R (>= 3.0.2), MASS, plyr, reshape, Biobase, ggplot2
Imports methods, Formula, data.table, pracma, MCMCpack, coda, modeest, testthat, Rcpp, scales, dplyr, tidyr, rlang
System Requirements
URL
See More
Suggests parallel, knitr
Linking To Rcpp, RcppArmadillo
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MIMOSA_1.28.1.tar.gz
Windows Binary MIMOSA_1.28.1.zip (32- & 64-bit)
macOS 10.13 (High Sierra) MIMOSA_1.28.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/MIMOSA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MIMOSA
Bioc Package Browser https://code.bioconductor.org/browse/MIMOSA/
Package Short Url https://bioconductor.org/packages/MIMOSA/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive