tissueTreg

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see tissueTreg.

TWGBS and RNA-seq data from tissue T regulatory cells from mice


Bioconductor version: 3.10

The package provides ready to use epigenomes (obtained from TWGBS) and transcriptomes (RNA-seq) from various tissues as obtained in the study (Delacher and Imbusch 2017, PMID: 28783152). Regulatory T cells (Treg cells) perform two distinct functions: they maintain self-tolerance, and they support organ homeostasis by differentiating into specialized tissue Treg cells. The underlying dataset characterises the epigenetic and transcriptomic modifications for specialized tissue Treg cells.

Author: Charles Imbusch [aut, cre], Michael Delacher [aut], Markus Feuerer [aut], Benedikt Brors [aut]

Maintainer: Charles Imbusch <c.imbusch at dkfz.de>

Citation (from within R, enter citation("tissueTreg")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tissueTreg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tissueTreg")
tissueTreg HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, Mus_musculus_Data, RNASeqData, SequencingData, Tissue
Version 1.6.0
License GPL (>= 2)
Depends R (>= 3.5)
Imports
System Requirements
URL https://github.com/cimbusch/tissueTreg
See More
Suggests BiocStyle, knitr, rmarkdown, testthat, ExperimentHub, bsseq, SummarizedExperiment
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tissueTreg_1.6.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/tissueTreg
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tissueTreg
Package Short Url https://bioconductor.org/packages/tissueTreg/
Package Downloads Report Download Stats