signatureSearchData

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see signatureSearchData.

Datasets for signatureSearch package


Bioconductor version: 3.10

CMAP/LINCS hdf5 databases and other annotations used for signatureSearch software package.

Author: Yuzhu Duan <yduan004 at ucr.edu>, Thomas Girke <thomas.girke at ucr.edu>

Maintainer: Yuzhu Duan <yduan004 at ucr.edu>

Citation (from within R, enter citation("signatureSearchData")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("signatureSearchData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("signatureSearchData")
signatureSearchData HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData
Version 1.0.0
License Artistic-2.0
Depends R (>= 3.6)
Imports ExperimentHub, utils, affy, limma, Biobase, magrittr, dplyr, R.utils, stats, signatureSearch, rhdf5
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Suggests knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package signatureSearchData_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/signatureSearchData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/signatureSearchData
Package Short Url https://bioconductor.org/packages/signatureSearchData/
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