brainImageRdata

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see brainImageRdata.

Image masks and expression data for use with BrainImageR


Bioconductor version: 3.10

brainImageRdata contains image masks for the developing human and the adult human brain. These masks can be used in conjunction with the gene expression data to generate spatial gene set enrichment plots. It also contains the expression data for the 15 pcw human brain, the adult human brain, and the developing human brain.

Author: Sara Linker

Maintainer: Sara Linker <slinker at salk.edu>

Citation (from within R, enter citation("brainImageRdata")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("brainImageRdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("brainImageRdata")
brainImageRdata HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, ExpressionData, Homo_sapiens_Data, OrganismData
Version 1.4.0
License CC BY-SA 4.0
Depends ExperimentHub
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package brainImageRdata_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/brainImageRdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/brainImageRdata
Package Short Url https://bioconductor.org/packages/brainImageRdata/
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