RIPSeekerData

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RIPSeekerData.

test data for RIPSeeker


Bioconductor version: 3.10

The RIP-seq data in BAM format are the test data for the package RIPSeeker. The data correspond to two RIP-seq experiments, namely PRC2 and CCNT1. Raw data from NCBI Gene Expression Omnibus under accession numbers GSE17064 for PRC2 and in-house for CCNT1.

Author: Yue Li

Maintainer: Alejandro Reyes <reyes at embl.de>

Citation (from within R, enter citation("RIPSeekerData")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RIPSeekerData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RIPSeekerData")
RIP-seq datasets for testing RIPSeeker package PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData, GEO, Genome, RIPSeqData, SequencingData, StemCell
Version 1.22.0
License GPL-2
Depends RIPSeeker
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RIPSeekerData_1.22.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/RIPSeekerData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RIPSeekerData
Package Short Url https://bioconductor.org/packages/RIPSeekerData/
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