DuoClustering2018

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see DuoClustering2018.

Data, Clustering Results and Visualization Functions From Duò et al (2018)


Bioconductor version: 3.10

Preprocessed experimental and simulated scRNA-seq data sets used for evaluation of clustering methods for scRNA-seq data in Duò et al (2018). Also contains results from applying several clustering methods to each of the data sets, and functions for plotting method performance.

Author: Angelo Duò, Charlotte Soneson

Maintainer: Angelo Duò <angelo.duo at icloud.com>

Citation (from within R, enter citation("DuoClustering2018")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DuoClustering2018")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DuoClustering2018")
Apply clustering method HTML R Script
Plot performance summaries HTML R Script
Visualize data sets and clustering results with iSEE HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, SingleCellData
Version 1.4.0
License GPL (>=2)
Depends
Imports ExperimentHub, utils, magrittr, dplyr, tidyr, mclust, ggplot2, purrr, reshape2, viridis, ggthemes, stats, methods
System Requirements
URL
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Suggests knitr, rmarkdown, BiocStyle, iSEE, scater, SingleCellExperiment, SummarizedExperiment, plyr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DuoClustering2018_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/DuoClustering2018
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DuoClustering2018
Package Short Url https://bioconductor.org/packages/DuoClustering2018/
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