traseR

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see traseR.

GWAS trait-associated SNP enrichment analyses in genomic intervals


Bioconductor version: 3.10

traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.

Author: Li Chen, Zhaohui S.Qin

Maintainer: li chen<li.chen at emory.edu>

Citation (from within R, enter citation("traseR")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("traseR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("traseR")
Perform GWAS trait-associated SNP enrichment analyses in genomic intervals PDF R Script
Reference Manual PDF

Details

biocViews Alignment, Coverage, DataImport, Genetics, QualityControl, Sequencing, Software
Version 1.16.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL
Depends R (>= 3.2.0), GenomicRanges, IRanges, BSgenome.Hsapiens.UCSC.hg19
Imports
System Requirements
URL
See More
Suggests BiocStyle, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package traseR_1.16.0.tar.gz
Windows Binary traseR_1.16.0.zip
Mac OS X 10.11 (El Capitan) traseR_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/traseR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/traseR
Bioc Package Browser https://code.bioconductor.org/browse/traseR/
Package Short Url https://bioconductor.org/packages/traseR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive