seqLogo
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see seqLogo.
Sequence logos for DNA sequence alignments
Bioconductor version: 3.10
seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).
Author: Oliver Bembom
Maintainer: Oliver Bembom <oliver.bembom at gmail.com>
Citation (from within R, enter
citation("seqLogo")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("seqLogo")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("seqLogo")| Sequence logos for DNA sequence alignments | R Script | |
| Reference Manual |
Details
| biocViews | SequenceMatching, Software |
| Version | 1.52.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (17 years) |
| License | LGPL (>= 2) |
| Depends | methods, grid |
| Imports | stats4 |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | generegulation, motifRG, rGADEM |
| Imports Me | igvR, IntEREst, motifRG, PWMEnrich, rGADEM, riboSeqR, SPLINTER, TFBSTools |
| Suggests Me | BCRANK, DiffLogo, Logolas, motifcounter, universalmotif |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | seqLogo_1.52.0.tar.gz |
| Windows Binary | seqLogo_1.52.0.zip |
| Mac OS X 10.11 (El Capitan) | seqLogo_1.52.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/seqLogo |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/seqLogo |
| Bioc Package Browser | https://code.bioconductor.org/browse/seqLogo/ |
| Package Short Url | https://bioconductor.org/packages/seqLogo/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |