plgem

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see plgem.

Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)


Bioconductor version: 3.10

The Power Law Global Error Model (PLGEM) has been shown to faithfully model the variance-versus-mean dependence that exists in a variety of genome-wide datasets, including microarray and proteomics data. The use of PLGEM has been shown to improve the detection of differentially expressed genes or proteins in these datasets.

Author: Mattia Pelizzola <mattia.pelizzola at gmail.com> and Norman Pavelka <normanpavelka at gmail.com>

Maintainer: Norman Pavelka <normanpavelka at gmail.com>

Citation (from within R, enter citation("plgem")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plgem")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("plgem")
An introduction to PLGEM PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, MassSpectrometry, Microarray, Proteomics, Software
Version 1.58.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License GPL-2
Depends R (>= 2.10)
Imports utils, Biobase(>= 2.5.5), MASS
System Requirements
URL http://www.genopolis.it
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me INSPEcT
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package plgem_1.58.0.tar.gz
Windows Binary plgem_1.58.0.zip
Mac OS X 10.11 (El Capitan) plgem_1.58.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/plgem
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/plgem
Bioc Package Browser https://code.bioconductor.org/browse/plgem/
Package Short Url https://bioconductor.org/packages/plgem/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive