muscle

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see muscle.

Multiple Sequence Alignment with MUSCLE


Bioconductor version: 3.10

MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.

Author: Algorithm by Robert C. Edgar. R port by Alex T. Kalinka.

Maintainer: Alex T. Kalinka <alex.t.kalinka at gmail.com>

Citation (from within R, enter citation("muscle")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("muscle")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("muscle")
A guide to using muscle PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Alignment, DataImport, Genetics, MultipleSequenceAlignment, SequenceMatching, Sequencing, Software
Version 3.28.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License Unlimited
Depends Biostrings
Imports
System Requirements
URL http://www.drive5.com/muscle/
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package muscle_3.28.0.tar.gz
Windows Binary muscle_3.28.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) muscle_3.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/muscle
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/muscle
Bioc Package Browser https://code.bioconductor.org/browse/muscle/
Package Short Url https://bioconductor.org/packages/muscle/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive