logitT

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see logitT.

logit-t Package


Bioconductor version: 3.10

The logitT library implements the Logit-t algorithm introduced in --A high performance test of differential gene expression for oligonucleotide arrays-- by William J Lemon, Sandya Liyanarachchi and Ming You for use with Affymetrix data stored in an AffyBatch object in R.

Author: Tobias Guennel <tguennel at vcu.edu>

Maintainer: Tobias Guennel <tguennel at vcu.edu>

Citation (from within R, enter citation("logitT")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("logitT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("logitT")
logitT primer PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, Microarray, Software
Version 1.44.0
In Bioconductor since BioC 2.3 (R-2.8) (15.5 years)
License GPL (>= 2)
Depends affy
Imports
System Requirements
URL http://www.bioconductor.org
See More
Suggests SpikeInSubset
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package logitT_1.44.0.tar.gz
Windows Binary logitT_1.44.0.zip
Mac OS X 10.11 (El Capitan) logitT_1.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/logitT
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/logitT
Bioc Package Browser https://code.bioconductor.org/browse/logitT/
Package Short Url https://bioconductor.org/packages/logitT/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive