frmaTools

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see frmaTools.

Frozen RMA Tools


Bioconductor version: 3.10

Tools for advanced use of the frma package.

Author: Matthew N. McCall <mccallm at gmail.com>, Rafael A. Irizarry <rafa at jhu.edu>

Maintainer: Matthew N. McCall <mccallm at gmail.com>

Citation (from within R, enter citation("frmaTools")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("frmaTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("frmaTools")
frmaTools: Create packages containing the vectors used by frma. PDF R Script
Reference Manual PDF

Details

biocViews Microarray, Preprocessing, Software
Version 1.38.0
In Bioconductor since BioC 2.6 (R-2.11) (14 years)
License GPL (>= 2)
Depends R (>= 2.10.0), affy
Imports Biobase, DBI, methods, preprocessCore, stats, utils
System Requirements
URL http://bioconductor.org
See More
Suggests oligo, pd.huex.1.0.st.v2, pd.hugene.1.0.st.v1, frma, affyPLM, hgu133aprobe, hgu133atagprobe, hgu133plus2probe, hgu133acdf, hgu133atagcdf, hgu133plus2cdf, hgu133afrmavecs, frmaExampleData
Linking To
Enhances
Depends On Me
Imports Me DeSousa2013
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package frmaTools_1.38.0.tar.gz
Windows Binary frmaTools_1.38.0.zip
Mac OS X 10.11 (El Capitan) frmaTools_1.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/frmaTools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/frmaTools
Bioc Package Browser https://code.bioconductor.org/browse/frmaTools/
Package Short Url https://bioconductor.org/packages/frmaTools/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive