cleaver

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see cleaver.

Cleavage of Polypeptide Sequences


Bioconductor version: 3.10

In-silico cleavage of polypeptide sequences. The cleavage rules are taken from: http://web.expasy.org/peptide_cutter/peptidecutter_enzymes.html

Author: Sebastian Gibb [aut, cre]

Maintainer: Sebastian Gibb <mail at sebastiangibb.de>

Citation (from within R, enter citation("cleaver")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cleaver")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cleaver")
In-silico cleavage of polypeptides HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Proteomics, Software
Version 1.24.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL (>= 3)
Depends R (>= 3.0.0), methods, Biostrings(>= 1.29.8)
Imports S4Vectors, IRanges
System Requirements
URL https://github.com/sgibb/cleaver/
Bug Reports https://github.com/sgibb/cleaver/issues/
See More
Suggests testthat (>= 0.8), knitr, BiocStyle(>= 0.0.14), rmarkdown, BRAIN, UniProt.ws(>= 2.1.4)
Linking To
Enhances
Depends On Me
Imports Me Pbase, synapter
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cleaver_1.24.0.tar.gz
Windows Binary cleaver_1.24.0.zip
Mac OS X 10.11 (El Capitan) cleaver_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cleaver
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cleaver
Bioc Package Browser https://code.bioconductor.org/browse/cleaver/
Package Short Url https://bioconductor.org/packages/cleaver/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive