affylmGUI

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see affylmGUI.

GUI for limma Package with Affymetrix Microarrays


Bioconductor version: 3.10

A Graphical User Interface (GUI) for analysis of Affymetrix microarray gene expression data using the affy and limma packages.

Author: James Wettenhall [cre,aut], Ken Simpson [aut], Gordon Smyth [aut], Keith Satterley [ctb]

Maintainer: Gordon Smyth <smyth at wehi.edu.au>

Citation (from within R, enter citation("affylmGUI")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affylmGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affylmGUI")
about.html HTML
affylmGUI Vignette PDF R Script
CustMenu.html HTML
Extracting affy and limma objects from affylmGUI files PDF
index.html HTML
windowsFocus.html HTML
Reference Manual PDF

Details

biocViews BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Regression, Software, TimeCourse, Transcription, mRNAMicroarray
Version 1.60.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License GPL (>=2)
Depends
Imports grDevices, graphics, stats, utils, tcltk, tkrplot, limma, affy, affyio, affyPLM, gcrma, BiocGenerics, BiocManager, R2HTML, xtable
System Requirements
URL http://bioinf.wehi.edu.au/affylmGUI/
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affylmGUI_1.60.0.tar.gz
Windows Binary affylmGUI_1.60.0.zip
Mac OS X 10.11 (El Capitan) affylmGUI_1.60.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/affylmGUI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affylmGUI
Bioc Package Browser https://code.bioconductor.org/browse/affylmGUI/
Package Short Url https://bioconductor.org/packages/affylmGUI/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive