affyPara

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see affyPara.

Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays


Bioconductor version: 3.10

The package contains parallelized functions for exploratory oligonucleotide array analysis. The package is designed for large numbers of microarray data.

Author: Markus Schmidberger <schmidb at ibe.med.uni-muenchen.de>, Esmeralda Vicedo <e.vicedo at gmx.net>, Ulrich Mansmann <mansmann at ibe.med.uni-muenchen.de>

Maintainer: Markus Schmidberger <MSchmidberger at freenet.de>

Citation (from within R, enter citation("affyPara")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affyPara")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affyPara")
Parallelized affy functions for preprocessing PDF R Script
Simulation Study for VSN Add-On Normalization and Subsample Size PDF R Script
Reference Manual PDF
README Text
NEWS Text

Details

biocViews Microarray, Preprocessing, Software
Version 1.46.0
In Bioconductor since BioC 2.2 (R-2.7) (16 years)
License GPL-3
Depends R (>= 2.5.0), methods, affy(>= 1.20.0), snow (>= 0.2-3), vsn(>= 3.6.0), aplpack (>= 1.1.1), affyio
Imports
System Requirements
URL http://www.ibe.med.uni-muenchen.de
See More
Suggests affydata
Linking To
Enhances affy
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affyPara_1.46.0.tar.gz
Windows Binary affyPara_1.46.0.zip
Mac OS X 10.11 (El Capitan) affyPara_1.46.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/affyPara
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affyPara
Bioc Package Browser https://code.bioconductor.org/browse/affyPara/
Package Short Url https://bioconductor.org/packages/affyPara/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive