TnT

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see TnT.

Interactive Visualization for Genomic Features


Bioconductor version: 3.10

A R interface to the TnT javascript library (https://github.com/ tntvis) to provide interactive and flexible visualization of track-based genomic data.

Author: Jialin Ma [cre, aut], Miguel Pignatelli [aut], Toby Hocking [aut]

Maintainer: Jialin Ma <marlin- at gmx.cn>

Citation (from within R, enter citation("TnT")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TnT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TnT")
Introduction to TnT HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software, Visualization
Version 1.8.1
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License AGPL-3
Depends R (>= 3.4), GenomicRanges
Imports methods, stats, utils, grDevices, htmlwidgets, jsonlite, data.table, Biobase, GenomeInfoDb, IRanges, S4Vectors, knitr
System Requirements
URL https://github.com/Marlin-Na/TnT
Bug Reports https://github.com/Marlin-Na/TnT/issues
See More
Suggests GenomicFeatures, shiny, BiocManager, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TnT_1.8.1.tar.gz
Windows Binary TnT_1.8.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) TnT_1.8.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/TnT
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TnT
Bioc Package Browser https://code.bioconductor.org/browse/TnT/
Package Short Url https://bioconductor.org/packages/TnT/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive