TPP2D

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see TPP2D.

FDR-controlled analysis of 2D-TPP experiments

Bioconductor version: 3.10

FDR-controlled analysis of 2D-TPP experiments by functional analysis of dose-response curves across temperatures.

Author: Nils Kurzawa [aut, cre], Holger Franken [aut], Simon Anders [aut], Wolfgang Huber [aut], Mikhail M. Savitski [aut]

Maintainer: Nils Kurzawa <nils.kurzawa at embl.de>

Citation (from within R, enter citation("TPP2D")):

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TPP2D")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TPP2D")

Introduction to TPP2D for 2D-TPP analysis	HTML	R Script
Reference Manual	PDF
NEWS	Text

biocViews	DataImport, Proteomics, Software
Version	1.2.3
In Bioconductor since	BioC 3.9 (R-3.6) (5 years)
License	GPL-3
Depends	R (>= 3.6.0), stats, utils, dplyr, methods
Imports	ggplot2, tidyr, foreach, doParallel, openxlsx, stringr, RCurl, parallel, MASS
System Requirements
URL	http://bioconductor.org/packages/TPP2D
Bug Reports	https://support.bioconductor.org/

Follow Installation instructions to use this package in your R session.

Source Package	TPP2D_1.2.3.tar.gz
Windows Binary	TPP2D_1.2.3.zip
Mac OS X 10.11 (El Capitan)	TPP2D_1.2.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TPP2D
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TPP2D
Bioc Package Browser	https://code.bioconductor.org/browse/TPP2D/
Package Short Url	https://bioconductor.org/packages/TPP2D/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.10	Source Archive