SigFuge

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see SigFuge.

SigFuge


Bioconductor version: 3.10

Algorithm for testing significance of clustering in RNA-seq data.

Author: Patrick Kimes, Christopher Cabanski

Maintainer: Patrick Kimes <patrick.kimes at gmail.com>

Citation (from within R, enter citation("SigFuge")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SigFuge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SigFuge")
SigFuge Tutorial PDF R Script
Reference Manual PDF

Details

biocViews Clustering, ImmunoOncology, RNASeq, Software, Visualization
Version 1.24.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-3
Depends R (>= 3.1.1), GenomicRanges
Imports ggplot2, matlab, reshape, sigclust
System Requirements
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Suggests org.Hs.eg.db, prebsdata, Rsamtools(>= 1.17.0), TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SigFuge_1.24.0.tar.gz
Windows Binary SigFuge_1.24.0.zip
Mac OS X 10.11 (El Capitan) SigFuge_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SigFuge
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SigFuge
Bioc Package Browser https://code.bioconductor.org/browse/SigFuge/
Package Short Url https://bioconductor.org/packages/SigFuge/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive