SISPA

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SISPA.

SISPA: Method for Sample Integrated Set Profile Analysis


Bioconductor version: 3.10

Sample Integrated Set Profile Analysis (SISPA) is a method designed to define sample groups with similar gene set enrichment profiles.

Author: Bhakti Dwivedi and Jeanne Kowalski

Maintainer: Bhakti Dwivedi <bhakti.dwivedi at emory.edu>

Citation (from within R, enter citation("SISPA")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SISPA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews GeneSetEnrichment, GenomeWideAssociation, Software
Version 1.16.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL-2
Depends R (>= 3.2), genefilter, GSVA, changepoint
Imports data.table, plyr, ggplot2
System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SISPA_1.16.0.tar.gz
Windows Binary SISPA_1.16.0.zip
Mac OS X 10.11 (El Capitan) SISPA_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SISPA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SISPA
Bioc Package Browser https://code.bioconductor.org/browse/SISPA/
Package Short Url https://bioconductor.org/packages/SISPA/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive