SELEX

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see SELEX.

Functions for analyzing SELEX-seq data


Bioconductor version: 3.10

Tools for quantifying DNA binding specificities based on SELEX-seq data

Author: Chaitanya Rastogi, Dahong Liu, and Harmen Bussemaker

Maintainer: Harmen Bussemaker <hjb2004 at columbia.edu>

Citation (from within R, enter citation("SELEX")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SELEX")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SELEX")
Motif Discovery with SELEX-seq PDF R Script
Reference Manual PDF

Details

biocViews GeneRegulation, MotifAnnotation, MotifDiscovery, Software, Transcription
Version 1.18.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL (>=2)
Depends R (>= 2.7.0), rJava (>= 0.5-0), Biostrings(>= 2.26.0)
Imports
System Requirements Java (>= 1.5)
URL http://bussemakerlab.org/software/SELEX/
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SELEX_1.18.0.tar.gz
Windows Binary SELEX_1.18.0.zip
Mac OS X 10.11 (El Capitan) SELEX_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SELEX
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SELEX
Bioc Package Browser https://code.bioconductor.org/browse/SELEX/
Package Short Url https://bioconductor.org/packages/SELEX/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive