MSGFgui

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MSGFgui.

A shiny GUI for MSGFplus


Bioconductor version: 3.10

This package makes it possible to perform analyses using the MSGFplus package in a GUI environment. Furthermore it enables the user to investigate the results using interactive plots, summary statistics and filtering. Lastly it exposes the current results to another R session so the user can seamlessly integrate the gui into other workflows.

Author: Thomas Lin Pedersen

Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>

Citation (from within R, enter citation("MSGFgui")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MSGFgui")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSGFgui")
Using MSGFgui HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GUI, ImmunoOncology, MassSpectrometry, Proteomics, Software, Visualization
Version 1.20.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL (>= 2)
Depends mzR, xlsx
Imports shiny, mzID(>= 1.2), MSGFplus, shinyFiles (>= 0.4.0), tools
System Requirements
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Suggests knitr, testthat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSGFgui_1.20.0.tar.gz
Windows Binary MSGFgui_1.20.0.zip
Mac OS X 10.11 (El Capitan) MSGFgui_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MSGFgui
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MSGFgui
Bioc Package Browser https://code.bioconductor.org/browse/MSGFgui/
Package Short Url https://bioconductor.org/packages/MSGFgui/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive