M3C

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see M3C.

Monte Carlo Reference-based Consensus Clustering


Bioconductor version: 3.10

M3C is a consensus clustering algorithm that uses a Monte Carlo simulation to eliminate overestimation of K and can reject the null hypothesis K=1.

Author: Christopher John, David Watson

Maintainer: Christopher John <chris.r.john86 at gmail.com>

Citation (from within R, enter citation("M3C")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("M3C")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("M3C")
M3C PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Clustering, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription
Version 1.8.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License AGPL-3
Depends R (>= 3.5.0)
Imports ggplot2, Matrix, doSNOW, NMF, RColorBrewer, cluster, parallel, foreach, doParallel, matrixcalc, dendextend, sigclust, Rtsne, survival, corpcor, umap
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package M3C_1.8.0.tar.gz
Windows Binary M3C_1.8.0.zip
Mac OS X 10.11 (El Capitan) M3C_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/M3C
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/M3C
Bioc Package Browser https://code.bioconductor.org/browse/M3C/
Package Short Url https://bioconductor.org/packages/M3C/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive