LVSmiRNA

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see LVSmiRNA.

LVS normalization for Agilent miRNA data


Bioconductor version: 3.10

Normalization of Agilent miRNA arrays.

Author: Stefano Calza, Suo Chen, Yudi Pawitan

Maintainer: Stefano Calza <stefano.calza at unibs.it>

Citation (from within R, enter citation("LVSmiRNA")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LVSmiRNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LVSmiRNA")
LVSmiRNA.pdf PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews AgilentChip, Microarray, OneChannel, Preprocessing, Software
Version 1.36.0
In Bioconductor since BioC 2.7 (R-2.12) (13.5 years)
License GPL-2
Depends R (>= 3.1.0), methods, splines
Imports BiocGenerics, stats4, graphics, stats, utils, MASS, Biobase, quantreg, limma, affy, SparseM, vsn, zlibbioc
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Enhances parallel, snow, Rmpi
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LVSmiRNA_1.36.0.tar.gz
Windows Binary LVSmiRNA_1.36.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) LVSmiRNA_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/LVSmiRNA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LVSmiRNA
Bioc Package Browser https://code.bioconductor.org/browse/LVSmiRNA/
Package Short Url https://bioconductor.org/packages/LVSmiRNA/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive