LINC

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see LINC.

co-expression of lincRNAs and protein-coding genes


Bioconductor version: 3.10

This package provides methods to compute co-expression networks of lincRNAs and protein-coding genes. Biological terms associated with the sets of protein-coding genes predict the biological contexts of lincRNAs according to the 'Guilty by Association' approach.

Author: Manuel Goepferich, Carl Herrmann

Maintainer: Manuel Goepferich <manuel.goepferich at gmx.de>

Citation (from within R, enter citation("LINC")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LINC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LINC")
LINC - Co-Expression Analysis of lincRNAs HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BiologicalQuestion, GeneExpression, GeneRegulation, Software
Version 1.14.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License Artistic-2.0
Depends R (>= 3.3.1), methods, stats
Imports Rcpp (>= 0.11.0), DOSE, ggtree, gridExtra, ape, grid, png, Biobase, sva, reshape2, utils, grDevices, org.Hs.eg.db, clusterProfiler, ggplot2, ReactomePA
System Requirements
URL
See More
Suggests RUnit, BiocGenerics, knitr, biomaRt
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LINC_1.14.0.tar.gz
Windows Binary LINC_1.14.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) LINC_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/LINC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LINC
Bioc Package Browser https://code.bioconductor.org/browse/LINC/
Package Short Url https://bioconductor.org/packages/LINC/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive