IVAS

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see IVAS.

Identification of genetic Variants affecting Alternative Splicing


Bioconductor version: 3.10

Identification of genetic variants affecting alternative splicing.

Author: Seonggyun Han, Sangsoo Kim

Maintainer: Seonggyun Han <hangost at ssu.ac.kr>

Citation (from within R, enter citation("IVAS")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IVAS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IVAS")
IVAS : Identification of genetic Variants affecting Alternative Splicing PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, GeneRegulation, ImmunoOncology, RNASeq, Regression, SNP, Sequencing, Software, Transcription
Version 2.6.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-2
Depends R (> 3.0.0), GenomicFeatures, ggplot2, Biobase
Imports doParallel, lme4, BiocGenerics, GenomicRanges, IRanges, foreach, AnnotationDbi, S4Vectors, GenomeInfoDb, ggfortify, grDevices, methods, Matrix, BiocParallel, utils, stats
System Requirements
URL
See More
Suggests BiocStyle
Linking To
Enhances
Depends On Me IMAS
Imports Me ASpediaFI
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package IVAS_2.6.0.tar.gz
Windows Binary IVAS_2.6.0.zip
Mac OS X 10.11 (El Capitan) IVAS_2.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/IVAS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/IVAS
Bioc Package Browser https://code.bioconductor.org/browse/IVAS/
Package Short Url https://bioconductor.org/packages/IVAS/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive