HPAanalyze

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see HPAanalyze.

Retrieve and analyze data from the Human Protein Atlas


Bioconductor version: 3.10

Provide functions for retrieving, exploratory analyzing and visualizing the Human Protein Atlas data.

Author: Anh Nhat Tran [aut, cre]

Maintainer: Anh Nhat Tran <trannhatanh89 at gmail.com>

Citation (from within R, enter citation("HPAanalyze")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HPAanalyze")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HPAanalyze")
1. HPAanalyze quick start guide: Acquire and visualize the Human Protein Atlas (HPA) data in one function HTML R Script
2. HPAanalyze in-depth: Working with Human Protein Atlas (HPA) data in R HTML R Script
3. HPAanalyze use case: Combine with your Human Protein Atlas (HPA) queries HTML R Script
4. HPAanalyze use case: Working with Human Protein Atlas (HPA) xml files offline HTML R Script
5. HPAanalyze use case: Export Human Protein Atlas (HPA) data as JSON HTML R Script
6. HPAanalyze use case: Download histology images from the Human Protein Atlas HTML R Script
99. Code for figures from HPAanalyze paper HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews CellBiology, Proteomics, Software, Visualization
Version 1.4.3
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.5.0)
Imports dplyr, openxlsx, ggplot2, tibble, xml2, stats, utils, gridExtra
System Requirements
URL
See More
Suggests knitr, rmarkdown, devtools, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HPAanalyze_1.4.3.tar.gz
Windows Binary HPAanalyze_1.4.3.zip
Mac OS X 10.11 (El Capitan) HPAanalyze_1.4.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/HPAanalyze
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HPAanalyze
Bioc Package Browser https://code.bioconductor.org/browse/HPAanalyze/
Package Short Url https://bioconductor.org/packages/HPAanalyze/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive