ExpressionView

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ExpressionView.

Visualize biclusters identified in gene expression data


Bioconductor version: 3.10

ExpressionView visualizes possibly overlapping biclusters in a gene expression matrix. It can use the result of the ISA method (eisa package) or the algorithms in the biclust package or others. The viewer itself was developed using Adobe Flex and runs in a flash-enabled web browser.

Author: Andreas Luscher <andreas.luescher at a3.epfl.ch>

Maintainer: Gabor Csardi <csardi.gabor at gmail.com>

Citation (from within R, enter citation("ExpressionView")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ExpressionView")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExpressionView")
ExpressionView PDF R Script
ExpressionView file format PDF
How the ordering algorithm works PDF R Script
Reference Manual PDF

Details

biocViews Classification, GO, GeneExpression, KEGG, Microarray, Software, Visualization
Version 1.38.0
In Bioconductor since BioC 2.6 (R-2.11) (14 years)
License GPL (>= 2)
Depends caTools, bitops, methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi
Imports methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi
System Requirements
URL
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Suggests ALL, hgu95av2.db, biclust, affy
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ExpressionView_1.38.0.tar.gz
Windows Binary ExpressionView_1.38.0.zip
Mac OS X 10.11 (El Capitan) ExpressionView_1.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ExpressionView
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ExpressionView
Bioc Package Browser https://code.bioconductor.org/browse/ExpressionView/
Package Short Url https://bioconductor.org/packages/ExpressionView/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive