DEFormats

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see DEFormats.

Differential gene expression data formats converter


Bioconductor version: 3.10

Convert between different data formats used by differential gene expression analysis tools.

Author: Andrzej Oleś

Maintainer: Andrzej Oleś <andrzej.oles at embl.de>

Citation (from within R, enter citation("DEFormats")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DEFormats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEFormats")
Differential gene expression data formats converter HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription
Version 1.14.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL-3
Depends
Imports checkmate, data.table, DESeq2, edgeR(>= 3.13.4), GenomicRanges, methods, S4Vectors, stats, SummarizedExperiment
System Requirements
URL https://github.com/aoles/DEFormats
Bug Reports https://github.com/aoles/DEFormats/issues
See More
Suggests BiocStyle(>= 1.8.0), knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me regionReport
Suggests Me ideal
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DEFormats_1.14.0.tar.gz
Windows Binary DEFormats_1.14.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) DEFormats_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DEFormats
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DEFormats
Bioc Package Browser https://code.bioconductor.org/browse/DEFormats/
Package Short Url https://bioconductor.org/packages/DEFormats/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive