Cormotif

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see Cormotif.

Correlation Motif Fit


Bioconductor version: 3.10

It fits correlation motif model to multiple studies to detect study specific differential expression patterns.

Author: Hongkai Ji, Yingying Wei

Maintainer: Yingying Wei <ywei at jhsph.edu>

Citation (from within R, enter citation("Cormotif")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Cormotif")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Cormotif")
Cormotif Vignette PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, Microarray, Software
Version 1.32.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License GPL-2
Depends R (>= 2.12.0), affy, limma
Imports affy, graphics, grDevices
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Cormotif_1.32.0.tar.gz
Windows Binary Cormotif_1.32.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) Cormotif_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Cormotif
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Cormotif
Bioc Package Browser https://code.bioconductor.org/browse/Cormotif/
Package Short Url https://bioconductor.org/packages/Cormotif/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive