ChromHeatMap

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see ChromHeatMap.

Heat map plotting by genome coordinate


Bioconductor version: 3.10

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.

Author: Tim F. Rayner

Maintainer: Tim F. Rayner <tfrayner at gmail.com>

Citation (from within R, enter citation("ChromHeatMap")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChromHeatMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChromHeatMap")
Plotting expression data with ChromHeatMap PDF R Script
Reference Manual PDF

Details

biocViews Software, Visualization
Version 1.40.0
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License Artistic-2.0
Depends R (>= 2.9.0), BiocGenerics(>= 0.3.2), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0)
Imports Biobase(>= 2.17.8), graphics, grDevices, methods, stats, IRanges, rtracklayer, GenomicRanges
System Requirements
URL
See More
Suggests ALL, hgu95av2.db
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ChromHeatMap_1.40.0.tar.gz
Windows Binary ChromHeatMap_1.40.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) ChromHeatMap_1.40.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ChromHeatMap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ChromHeatMap
Bioc Package Browser https://code.bioconductor.org/browse/ChromHeatMap/
Package Short Url https://bioconductor.org/packages/ChromHeatMap/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive