BioSeqClass

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see BioSeqClass.

Classification for Biological Sequences


Bioconductor version: 3.10

Extracting Features from Biological Sequences and Building Classification Model

Author: Li Hong sysptm@gmail.com

Maintainer: Li Hong <sysptm at gmail.com>

Citation (from within R, enter citation("BioSeqClass")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BioSeqClass")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioSeqClass")
Using the BioSeqClass Package PDF R Script
Reference Manual PDF

Details

biocViews Classification, Software
Version 1.44.0
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License LGPL (>= 2.0)
Depends R (>= 2.10), scatterplot3d
Imports Biostrings, ipred, e1071, klaR, randomForest, class, tree, nnet, rpart, party, foreign, Biobase, utils, stats, grDevices
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Suggests scatterplot3d
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BioSeqClass_1.44.0.tar.gz
Windows Binary BioSeqClass_1.44.0.zip
Mac OS X 10.11 (El Capitan) BioSeqClass_1.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BioSeqClass
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BioSeqClass
Bioc Package Browser https://code.bioconductor.org/browse/BioSeqClass/
Package Short Url https://bioconductor.org/packages/BioSeqClass/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive