BEAT

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see BEAT.

BEAT - BS-Seq Epimutation Analysis Toolkit


Bioconductor version: 3.10

Model-based analysis of single-cell methylation data

Author: Kemal Akman <akman at mpipz.mpg.de>

Maintainer: Kemal Akman <akman at mpipz.mpg.de>

Citation (from within R, enter citation("BEAT")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BEAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BEAT")
Analysing single-cell BS-Seq data with the "BEAT" package PDF R Script
Reference Manual PDF

Details

biocViews DNAMethylation, Epigenetics, Genetics, ImmunoOncology, MethylSeq, Software
Version 1.24.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License LGPL (>= 3.0)
Depends R (>= 2.13.0)
Imports GenomicRanges, ShortRead, Biostrings, BSgenome
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BEAT_1.24.0.tar.gz
Windows Binary BEAT_1.24.0.zip
Mac OS X 10.11 (El Capitan) BEAT_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BEAT
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BEAT
Bioc Package Browser https://code.bioconductor.org/browse/BEAT/
Package Short Url https://bioconductor.org/packages/BEAT/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive