AgiMicroRna

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see AgiMicroRna.

Processing and Differential Expression Analysis of Agilent microRNA chips


Bioconductor version: 3.10

Processing and Analysis of Agilent microRNA data

Author: Pedro Lopez-Romero <plopez at cnic.es>

Maintainer: Pedro Lopez-Romero <plopez at cnic.es>

Citation (from within R, enter citation("AgiMicroRna")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AgiMicroRna")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AgiMicroRna")
AgiMicroRna PDF R Script
Reference Manual PDF

Details

biocViews AgilentChip, DifferentialExpression, Microarray, OneChannel, Preprocessing, Software
Version 2.36.0
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License GPL-3
Depends R (>= 2.10), methods, Biobase, limma, affy(>= 1.22), preprocessCore, affycoretools
Imports Biobase
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Suggests geneplotter, marray, gplots, gtools, gdata, codelink
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AgiMicroRna_2.36.0.tar.gz
Windows Binary AgiMicroRna_2.36.0.zip
Mac OS X 10.11 (El Capitan) AgiMicroRna_2.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/AgiMicroRna
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AgiMicroRna
Bioc Package Browser https://code.bioconductor.org/browse/AgiMicroRna/
Package Short Url https://bioconductor.org/packages/AgiMicroRna/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive