To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("tracktables")

In most cases, you don't need to download the package archive at all.

tracktables

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see tracktables.

Build IGV tracks and HTML reports

Bioconductor version: 3.1

Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.

Author: Tom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang

Maintainer: Tom Carroll <tc.infomatics at gmail.com>

Citation (from within R, enter citation("tracktables")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("tracktables")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tracktables")

PDF	R Script	Creating IGV HTML reports with tracktables
HTML		EBFGI.html
HTML		IGV_Example.html
HTML		IGVEx3.html
HTML		Supplementary Materials
HTML		Tracktables user guide and examples
PDF		Reference Manual
Text		NEWS

biocViews	QualityControl, ReportWriting, Sequencing, Software
Version	1.2.3
In Bioconductor since	BioC 3.0 (R-3.1) (1.5 years)
License	GPL (>= 3)
Depends	R (>= 3.0.0)
Imports	IRanges, GenomicRanges, XVector, Rsamtools, XML, tractor.base, stringr, RColorBrewer, methods
LinkingTo
Suggests	knitr, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	tracktables_1.2.3.tar.gz
Windows Binary	tracktables_1.2.3.zip
Mac OS X 10.6 (Snow Leopard)	tracktables_1.2.3.tgz
Mac OS X 10.9 (Mavericks)	tracktables_1.2.3.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/tracktables/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/tracktables/
Package Downloads Report	Download Stats

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