- Home
- Bioconductor 3.1
- Software Packages
- polyester
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("polyester")
In most cases, you don't need to download the package archive at all.
polyester
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see polyester.
Simulate RNA-seq reads
Bioconductor version: 3.1
This package can be used to simulate RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression.
Author: Alyssa C. Frazee, Andrew E. Jaffe, Jeffrey T. Leek
Maintainer: Alyssa Frazee <alyssa.frazee at gmail.com>, Jeff Leek <jtleek at gmail.com>
Citation (from within R,
enter citation("polyester")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("polyester")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("polyester")
| HTML | R Script | The Polyester package for simulating RNA-seq reads |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DifferentialExpression, Sequencing, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (1.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.0.0) |
| Imports | Biostrings(>= 2.32.0), IRanges, S4Vectors, logspline, limma |
| LinkingTo | |
| Suggests | knitr, ballgown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | polyester_1.4.0.tar.gz |
| Windows Binary | polyester_1.4.0.zip |
| Mac OS X 10.6 (Snow Leopard) | polyester_1.4.0.tgz |
| Mac OS X 10.9 (Mavericks) | polyester_1.4.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/polyester/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/polyester/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
