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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("flowMap")
In most cases, you don't need to download the package archive at all.
flowMap
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see flowMap.
Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-Rafsky Test
Bioconductor version: 3.1
flowMap quantifies the similarity of cell populations across multiple flow cytometry samples using a nonparametric multivariate statistical test. The method is able to map cell populations of different size, shape, and proportion across multiple flow cytometry samples. The algorithm can be incorporate in any flow cytometry work flow that requires accurat quantification of similarity between cell populations.
Author: Chiaowen Joyce Hsiao, Yu Qian, and Richard H. Scheuermann
Maintainer: Chiaowen Joyce Hsiao <joyce.hsiao1 at gmail.com>
Citation (from within R,
enter citation("flowMap")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("flowMap")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowMap")
| R Script | Mapping cell populations in flow cytometry data flowMap-FR | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | FlowCytometry, MultipleComparison, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (2.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 3.0.1), ade4 (>= 1.5-2), doParallel (>= 1.0.3), abind (>= 1.4.0), reshape2 (>= 1.2.2), scales (>= 0.2.3), Matrix (>= 1.1-4), methods (>= 2.14) |
| Imports | |
| LinkingTo | |
| Suggests | BiocStyle, knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | flowMap_1.6.0.tar.gz |
| Windows Binary | flowMap_1.6.0.zip |
| Mac OS X 10.6 (Snow Leopard) | flowMap_1.6.0.tgz |
| Mac OS X 10.9 (Mavericks) | flowMap_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/flowMap/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/flowMap/ |
| Package Downloads Report | Download Stats |
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