To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TSCAN")
In most cases, you don't need to download the package archive at all.
TSCAN
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see TSCAN.
TSCAN: Tools for Single-Cell ANalysis
Bioconductor version: 3.1
TSCAN enables users to easily construct and tune pseudotemporal cell ordering as well as analyzing differentially expressed genes. TSCAN comes with a user-friendly GUI written in shiny. More features will come in the future.
Author: Zhicheng Ji, Hongkai Ji
Maintainer: Zhicheng Ji <zji4 at jhu.edu>
Citation (from within R,
enter citation("TSCAN")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TSCAN")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TSCAN")
| R Script | TSCAN: Tools for Single-Cell ANalysis | |
| Reference Manual |
Details
| biocViews | GUI, GeneExpression, Software, Visualization |
| Version | 1.4.1 |
| In Bioconductor since | BioC 3.0 (R-3.1) (1.5 years) |
| License | GPL(>=2) |
| Depends | R (>= 2.10.0) |
| Imports | ggplot2, shiny, plyr, grid, fastICA, igraph, combinat, mgcv, mclust, gplots |
| LinkingTo | |
| Suggests | knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | TSCAN_1.4.1.tar.gz |
| Windows Binary | TSCAN_1.4.1.zip |
| Mac OS X 10.6 (Snow Leopard) | TSCAN_1.4.1.tgz |
| Mac OS X 10.9 (Mavericks) | TSCAN_1.4.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/TSCAN/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/TSCAN/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
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