To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affycoretools")

In most cases, you don't need to download the package archive at all.

affycoretools

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see affycoretools.

Functions useful for those doing repetitive analyses with Affymetrix GeneChips.

Bioconductor version: 3.0

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("affycoretools")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affycoretools")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affycoretools")

PDF	R Script	affycoretools biomaRt Integration
PDF	R Script	affycoretools Overview
PDF	R Script	affycoretools, refactored
PDF		Reference Manual

biocViews	GeneExpression, Microarray, OneChannel, ReportWriting, Software
Version	1.38.0
In Bioconductor since	BioC 1.8 (R-2.3) (10 years)
License	Artistic-2.0
Depends	affy, Biobase, GO.db
Imports	biomaRt, limma, GOstats, annotate, annaffy, genefilter, gcrma, splines, xtable, AnnotationDbi, lattice, gplots, oligoClasses, ReportingTools, hwriter
LinkingTo
Suggests	affydata, hgfocuscdf, rgl, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me	AgiMicroRna
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	affycoretools_1.38.0.tar.gz
Windows Binary	affycoretools_1.38.0.zip
Mac OS X 10.6 (Snow Leopard)	affycoretools_1.38.0.tgz
Mac OS X 10.9 (Mavericks)	affycoretools_1.38.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/affycoretools/tree/release-3.0
Package Short Url	http://bioconductor.org/packages/affycoretools/
Package Downloads Report	Download Stats

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